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SubjectRe: multi-second application stall in open()
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On Wed, Mar 7, 2012 at 12:56 PM, Jens Axboe <axboe@kernel.dk> wrote:
> On 03/07/2012 05:28 PM, Vivek Goyal wrote:
>> On Wed, Mar 07, 2012 at 07:43:42AM -0600, Josh Hunt wrote:
>>> On Tue, Mar 6, 2012 at 3:56 PM, Josh Hunt <joshhunt00@gmail.com> wrote:
>>>> I am trying to diagnose a stall in an application when making a call
>>>> to open() with O_TRUNC. The issue was originally seen on 2.6.38 and
>>>> I've since reproduced on 2.6.35. I believe the last kernel that I did
>>>> not see the stall was 2.6.32. The system is under low to moderate cpu
>>>> and memory load when the issue occurs. The filesystem is ext2, but I
>>>> mounted it as ext4 and still saw the issue.
>>>>
>>>> To me it appears the O_TRUNC needs to truncate pages in the page
>>>> cache, but maybe those are already out for writeback? This causes the
>>>> open() to wait until that operation completes at which time it is then
>>>> able to proceed. If that's true then it looks like the writeback is
>>>> sitting on the queue forever waiting (tens of seconds) to be
>>>> dispatched to the device.
>>>>
>>>> Here's some more info/data I collected:
>>>> (Unfortunately the data here and attached are from separate runs so
>>>> the #s will not match up file to file.)
>>>>
>>>> Snippet of an strace when it is hanging:
>>>> 1329323286.589182 close(37)             = 0 <0.000010>
>>>> 1329323286.589212 clock_gettime(0x5 /* CLOCK_??? */, {1329323286,
>>>> 587579583}) = 0 <0.000007>
>>>> 1329323286.589241 open("/usr/local/etc/abcd/known/test808",
>>>> O_WRONLY|O_CREAT|O_TRUNC, 0644)                = 37 <76.841586>
>>>> 1329323363.441841 fchmod(37, 0644)      = 0 <0.000012>
>>>> 1329323363.441882 fcntl64(37, F_GETFL)  = 0x1 (flags O_WRONLY) <0.000011>
>>>> 1329323363.441915 fcntl64(37, F_SETFL, O_WRONLY|O_NONBLOCK) = 0 <0.000010>
>>>>
>>>> To debug this more I enabled the hang check timer to dump stack when
>>>> anything hung for longer than 10s. There I see the the hanging
>>>> application appearing to be stuck in sync_page(). See attached dmesg
>>>> for traces.
>>>>
>>>> I've also captured "iostat -xm 1" while the application was running
>>>> and have attached a snippet of that when the problem is occurring. I
>>>> see 100% utilization for many seconds and then eventually the
>>>> operations complete, but the await time is extremely high. To me there
>>>> doesn't look like much IO going on which could be starving out any
>>>> requests.
>>>>
>>>> I have not been able to perform a full bisection to better understand
>>>> what may be causing this, but do see this on 2.6.38, a little less
>>>> frequently but still occurs on 2.6.35, and no longer see the issue on
>>>> 2.6.32. If I switch slice_idle to 0 or change to the deadline
>>>> scheduler the issue appears to go away in both 2.6.35 and 38.
>>
>> Is it happening on latest kernel (3.3-rc6) ?
>>
>> Can you change the IO scheduler to deadline on sda and see if the issue
>> still happens. (echo deadline > /sys/block/sda/queue/scheduler).
>>
>> blktrace of cfq look odd. I see that some IO (async writes) are being
>> submitted but CFQ did not dispatch it for a long time.  Even some unplugs
>> came in still nothing happened. Also no completions are happening during
>> that window. Not sure why CFQ refuses to dispatch queued writes.
>>
>> Request added by flusher.
>>
>>   8,0    1    36926  5028.546000122  2846  A   W 20147012 + 8 <- (8,3)
>> 3375152
>>   8,0    1    36927  5028.546001798  2846  Q   W 20147012 + 8 [flush-8:0]
>>   8,0    1    36928  5028.546009900  2846  G   W 20147012 + 8 [flush-8:0]
>>   8,0    1    36929  5028.546014649  2846  I   W 20147012 + 8 (    4749)
>> [flush-8:0]
>>
>> And this request is dispatched after 22 seconds.
>>
>>   8,0    1    37056  5050.117337221   162  D   W 20147012 + 16 (21571322572) [sync_supers]
>>
>>
>> And it completes fairly fast.
>>
>>  8,0    0    36522  5050.117686149  9657  C   W 20147012 + 16 (  348928)
>> [0]
>>
>> So not sure why CFQ will hold that request for so long when other IO is
>> not happening.
>>
>> Please try latest kernels and see if deadline has the same issue. If not,
>> then we know somehow CFQ is related. If it still happens on latest
>> kernels, can you try capturing blktrace again when you are experiencing
>> the delays.
>
> I'm seeing something very similar here. While testing the gtk fio
> client, I ran a job that issued a lot of random reads to my primary
> disk. 64 ios in flight, direct, libaio, 512b random reads. Firefox
> essentially froze, windows starting freezing up around me.
>
> I'll try and reproduce, but a quick guess would be that things starting
> piling up in fsync() or stalling on writes in general, since we are
> heavily starving those.
>
> --
> Jens Axboe
>
The stack traces from the hang check timer do seem to always show
syslogd calling fsync in my case. So this could be fsync-related. In
my case there does not seem to be much IO going on though (at least
from what I can tell.)

--
Josh
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