Messages in this thread | | | Date | Wed, 1 Oct 2003 10:34:41 -0300 (BRT) | From | Marcelo Tosatti <> | Subject | Re: urgent! help, ide driver bug? |
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Zhang,
The filesystem is getting corrupted it seems. Try turning DMA off?
Vojtech, have you seen this?
> Attempt to access beyond end of device > 03:02: rw=0, want=75368548, limit=7815622 > ext2-fs error(device ide0(3:2)): ext2_check_page: bad entry > in directory #2: rec_len is smaller than minimal - offset=0, > inode=1097631760, rec_len=0, name_len=0 > remounting filesystem read_only
On Sun, 28 Sep 2003, Zhang Jian wrote:
> hi, > > I am a system manager in institute of biophysics, Nanjing University, I > encounter a big problem, seems related to IDE driver, now I am writing for > your warmly help! > > we buy a 32 nodes cluster, each with AMD 2600+, 512M Kingstone ECC > Registered MEM, MSI K7D master-L motherbord, ST Barracude 7200.7 80G > harddisk. We installed Redhat Linux 8.0 in it, > and run two programs each cost about 400M mem, thus force kernel use swap > disk. > then, after several minutes, some nodes crash down, whereas some nodes can > run > several hours to two days, varying from computer to computer. we also tried > readhat > 9.0(kernel 2.4.20-9) and debian(kernel 2.4.22), the problem remains the > same. > > here is the typical error message in debian, (in redhat, the error is > similar) > Attempt to access beyond end of device > 03:02: rw=0, want=75368548, limit=7815622 > ext2-fs error(device ide0(3:2)): ext2_check_page: bad entry > in directory #2: rec_len is smaller than minimal - offset=0, > inode=1097631760, rec_len=0, name_len=0 > remounting filesystem read_only > > > below is the partition table: > --------------------------------------------------------------------------- > Disk /dev/hda: 255 heads, 63 sectors, 9729 cylinders > Units = cylinders of 16065 * 512 bytes > > Device Boot Start End Blocks Id System > /dev/hda1 * 1 12 96358+ 83 Linux /boot > /dev/hda2 13 985 7815622+ 83 Linux / > /dev/hda3 986 1109 996030 82 Linux swap swap > /dev/hda4 1110 9729 69240150 83 Linux nouse > --------------------------------------------------------------------------- > > all our 32 nodes encounter similar problems, so I suspect whether > it is caused by some bugs in kernel or elsewhere. > I am looking forward to your warmly help! > Thank you very much! > > -------------------------------------------------------------------------------------- > > this is the fortran program we used to test the computer: > program test > > real*8 A(1000,1000,50) > > do while(.true.) > > do i=1,1000 > do j=1,1000 > do k=1,50 > A(i,j,k)=i*j*k > enddo > enddo > enddo > > enddo > > end > ---------------------------------------------------- > below is copied from /var/log/messages > > Sep 29 17:51:27 boss syslogd 1.4.1#10: restart. > Sep 29 17:51:27 boss kernel: klogd 1.4.1#10, log source = /proc/kmsg > started. > Sep 29 17:51:27 boss kernel: Inspecting /boot/System.map-2.4.22dualmp > Sep 29 17:51:27 boss kernel: Loaded 16905 symbols from > /boot/System.map-2.4.22dualmp. > Sep 29 17:51:27 boss kernel: Symbols match kernel version 2.4.22. > Sep 29 17:51:27 boss kernel: No module symbols loaded. > Sep 29 17:51:27 boss kernel: Linux version 2.4.22dualmp (root@boss) (gcc > version 2.95.4 20011002 (Debian prerelease)) #1 SMP Sun Sep 28 12:12:04 CST > 2003 > Sep 29 17:51:27 boss kernel: BIOS-provided physical RAM map: > Sep 29 17:51:27 boss kernel: BIOS-e820: 0000000000000000 - 00000000000a0000 > (usable) > Sep 29 17:51:27 boss kernel: BIOS-e820: 00000000000f0000 - 0000000000100000 > (reserved) > Sep 29 17:51:27 boss kernel: BIOS-e820: 0000000000100000 - 000000001fff0000 > (usable) > Sep 29 17:51:27 boss kernel: BIOS-e820: 000000001fff0000 - 000000001fff3000 > (ACPI NVS) > Sep 29 17:51:27 boss kernel: BIOS-e820: 000000001fff3000 - 0000000020000000 > (ACPI data) > Sep 29 17:51:27 boss kernel: BIOS-e820: 00000000fec00000 - 0000000100000000 > (reserved) > Sep 29 17:51:27 boss kernel: 511MB LOWMEM available. > Sep 29 17:51:27 boss kernel: found SMP MP-table at 000f4b00 > Sep 29 17:51:27 boss kernel: hm, page 000f4000 reserved twice. > Sep 29 17:51:27 boss kernel: hm, page 000f5000 reserved twice. > Sep 29 17:51:27 boss kernel: hm, page 000f1000 reserved twice. > Sep 29 17:51:27 boss kernel: hm, page 000f2000 reserved twice. > Sep 29 17:51:27 boss kernel: On node 0 totalpages: 131056 > Sep 29 17:51:27 boss kernel: zone(0): 4096 pages. > Sep 29 17:51:27 boss kernel: zone(1): 126960 pages. > Sep 29 17:51:27 boss kernel: zone(2): 0 pages. > Sep 29 17:51:27 boss kernel: Intel MultiProcessor Specification v1.4 > Sep 29 17:51:27 boss kernel: Virtual Wire compatibility mode. > Sep 29 17:51:27 boss kernel: OEM ID: OEM00000 Product ID: PROD00000000 APIC > at: 0xFEE00000 > Sep 29 17:51:27 boss kernel: Processor #0 Pentium(tm) Pro APIC version 17 > Sep 29 17:51:27 boss kernel: Processor #1 Pentium(tm) Pro APIC version 17 > Sep 29 17:51:27 boss kernel: I/O APIC #2 Version 17 at 0xFEC00000. > Sep 29 17:51:27 boss kernel: Enabling APIC mode: Flat.^IUsing 1 I/O APICs > Sep 29 17:51:27 boss kernel: Processors: 2 > Sep 29 17:51:27 boss kernel: Kernel command line: BOOT_IMAGE=Linux ro > root=302 > Sep 29 17:51:27 boss kernel: Initializing CPU#0 > Sep 29 17:51:27 boss kernel: Detected 2133.424 MHz processor. > Sep 29 17:51:27 boss kernel: Console: colour VGA+ 80x25 > Sep 29 17:51:27 boss kernel: Calibrating delay loop... 4259.84 BogoMIPS > Sep 29 17:51:27 boss kernel: Memory: 515952k/524224k available (1159k kernel > code, 7888k reserved, 335k data, 264k init, 0k highmem) > Sep 29 17:51:27 boss kernel: Dentry cache hash table entries: 65536 (order: > 7, 524288 bytes) > Sep 29 17:51:27 boss kernel: Inode cache hash table entries: 32768 (order: > 6, 262144 bytes) > Sep 29 17:51:27 boss kernel: Mount cache hash table entries: 512 (order: 0, > 4096 bytes) > Sep 29 17:51:27 boss kernel: Buffer cache hash table entries: 32768 (order: > 5, 131072 bytes) > Sep 29 17:51:27 boss kernel: Page-cache hash table entries: 131072 (order: > 7, 524288 bytes) > Sep 29 17:51:27 boss kernel: CPU: CLK_CTL MSR was 6003d22f. Reprogramming to > 2003d22f > Sep 29 17:51:27 boss kernel: CPU: L1 I Cache: 64K (64 bytes/line), D cache > 64K (64 bytes/line) > Sep 29 17:51:27 boss kernel: CPU: L2 Cache: 256K (64 bytes/line) > Sep 29 17:51:27 boss kernel: Enabling fast FPU save and restore... done. > Sep 29 17:51:27 boss kernel: Enabling unmasked SIMD FPU exception support... > done. > Sep 29 17:51:27 boss kernel: Checking 'hlt' instruction... OK. > Sep 29 17:51:27 boss kernel: POSIX conformance testing by UNIFIX > Sep 29 17:51:27 boss kernel: mtrr: v1.40 (20010327) Richard Gooch > (rgooch@atnf.csiro.au) > Sep 29 17:51:27 boss kernel: mtrr: detected mtrr type: Intel > Sep 29 17:51:27 boss kernel: CPU: L1 I Cache: 64K (64 bytes/line), D cache > 64K (64 bytes/line) > Sep 29 17:51:27 boss kernel: CPU: L2 Cache: 256K (64 bytes/line) > Sep 29 17:51:27 boss kernel: CPU0: AMD Athlon(tm) MP 2600+ stepping 01 > Sep 29 17:51:27 boss kernel: per-CPU timeslice cutoff: 731.42 usecs. > Sep 29 17:51:27 boss kernel: enabled ExtINT on CPU#0 > Sep 29 17:51:27 boss kernel: ESR value before enabling vector: 00000000 > Sep 29 17:51:27 boss kernel: ESR value after enabling vector: 00000000 > Sep 29 17:51:27 boss kernel: Booting processor 1/1 eip 2000 > Sep 29 17:51:27 boss kernel: Initializing CPU#1 > Sep 29 17:51:27 boss kernel: masked ExtINT on CPU#1 > Sep 29 17:51:27 boss kernel: ESR value before enabling vector: 00000000 > Sep 29 17:51:27 boss kernel: ESR value after enabling vector: 00000000 > Sep 29 17:51:27 boss kernel: Calibrating delay loop... 4259.84 BogoMIPS > Sep 29 17:51:27 boss kernel: CPU: CLK_CTL MSR was 6003d22f. Reprogramming to > 2003d22f > Sep 29 17:51:27 boss kernel: CPU: L1 I Cache: 64K (64 bytes/line), D cache > 64K (64 bytes/line) > Sep 29 17:51:27 boss kernel: CPU: L2 Cache: 256K (64 bytes/line) > Sep 29 17:51:27 boss kernel: CPU1: AMD Athlon(tm) MP stepping 01 > Sep 29 17:51:27 boss kernel: Total of 2 processors activated (8519.68 > BogoMIPS). > Sep 29 17:51:27 boss kernel: ENABLING IO-APIC IRQs > Sep 29 17:51:27 boss kernel: Setting 2 in the phys_id_present_map > Sep 29 17:51:27 boss kernel: ...changing IO-APIC physical APIC ID to 2 ... > ok. > Sep 29 17:51:27 boss kernel: ..TIMER: vector=0x31 pin1=2 pin2=0 > Sep 29 17:51:27 boss kernel: testing the IO APIC....................... > Sep 29 17:51:27 boss kernel: > Sep 29 17:51:27 boss kernel: .................................... done. > Sep 29 17:51:27 boss kernel: Using local APIC timer interrupts. > Sep 29 17:51:27 boss kernel: calibrating APIC timer ... > Sep 29 17:51:27 boss kernel: ..... CPU clock speed is 2133.4152 MHz. > Sep 29 17:51:27 boss kernel: ..... host bus clock speed is 266.6766 MHz. > Sep 29 17:51:27 boss kernel: cpu: 0, clocks: 2666766, slice: 888922 > Sep 29 17:51:27 boss kernel: > CPU0<T0:2666752,T1:1777824,D:6,S:888922,C:2666766> > Sep 29 17:51:27 boss kernel: cpu: 1, clocks: 2666766, slice: 888922 > Sep 29 17:51:27 boss kernel: > CPU1<T0:2666752,T1:888896,D:12,S:888922,C:2666766> > Sep 29 17:51:27 boss kernel: checking TSC synchronization across CPUs: > passed. > Sep 29 17:51:27 boss kernel: Waiting on wait_init_idle (map = 0x2) > Sep 29 17:51:27 boss kernel: All processors have done init_idle > Sep 29 17:51:27 boss kernel: mtrr: your CPUs had inconsistent fixed MTRR > settings > Sep 29 17:51:27 boss kernel: mtrr: probably your BIOS does not setup all > CPUs > Sep 29 17:51:27 boss kernel: PCI: PCI BIOS revision 2.10 entry at 0xfb130, > last bus=2 > Sep 29 17:51:27 boss kernel: PCI: Using configuration type 1 > Sep 29 17:51:27 boss kernel: PCI: Probing PCI hardware > Sep 29 17:51:27 boss kernel: PCI: Probing PCI hardware (bus 00) > Sep 29 17:51:27 boss kernel: PCI: Using IRQ router default [1022/700c] at > 00:00.0 > Sep 29 17:51:27 boss kernel: PCI->APIC IRQ transform: (B1,I5,P0) -> 17 > Sep 29 17:51:27 boss kernel: PCI->APIC IRQ transform: (B2,I0,P3) -> 19 > Sep 29 17:51:27 boss kernel: PCI->APIC IRQ transform: (B2,I9,P0) -> 17 > Sep 29 17:51:27 boss kernel: BIOS failed to enable PCI standards compliance, > fixing this error. > Sep 29 17:51:27 boss kernel: Linux NET4.0 for Linux 2.4 > Sep 29 17:51:27 boss kernel: Based upon Swansea University Computer Society > NET3.039 > Sep 29 17:51:27 boss kernel: Initializing RT netlink socket > Sep 29 17:51:27 boss kernel: Starting kswapd > Sep 29 17:51:27 boss kernel: Detected PS/2 Mouse Port. > Sep 29 17:51:27 boss kernel: pty: 256 Unix98 ptys configured > Sep 29 17:51:27 boss kernel: Serial driver version 5.05c (2001-07-08) with > MANY_PORTS SHARE_IRQ SERIAL_PCI enabled > Sep 29 17:51:27 boss kernel: ttyS00 at 0x03f8 (irq = 4) is a 16550A > Sep 29 17:51:27 boss kernel: ttyS01 at 0x02f8 (irq = 3) is a 16550A > Sep 29 17:51:27 boss kernel: eepro100.c:v1.09j-t 9/29/99 Donald Becker > http://www.scyld.com/network/eepro100.html > Sep 29 17:51:27 boss kernel: eepro100.c: $Revision: 1.36 $ 2000/11/17 > Modified by Andrey V. Savochki > n <saw@saw.sw.com.sg> and others > Sep 29 17:51:27 boss kernel: eth0: OEM i82557/i82558 10/100 Ethernet, > 00:0C:76:2A:2F:7D, IRQ 17. > Sep 29 17:51:27 boss kernel: Board assembly a32040-002, Physical > connectors present: RJ45 > Sep 29 17:51:27 boss kernel: Primary interface chip i82555 PHY #1. > Sep 29 17:51:27 boss kernel: General self-test: passed. > Sep 29 17:51:27 boss kernel: Serial sub-system self-test: passed. > Sep 29 17:51:27 boss kernel: Internal registers self-test: passed. > Sep 29 17:51:27 boss kernel: ROM checksum self-test: passed (0xd0a6c714). > Sep 29 17:51:27 boss kernel: Linux agpgart interface v0.99 (c) Jeff Hartmann > Sep 29 17:51:27 boss kernel: agpgart: Maximum main memory to use for agp > memory: 439M > Sep 29 17:51:27 boss kernel: agpgart: Detected AMD 760MP chipset > Sep 29 17:51:27 boss kernel: agpgart: AGP aperture is 128M @ 0xe0000000 > Sep 29 17:51:27 boss kernel: Uniform Multi-Platform E-IDE driver Revision: > 7.00beta4-2.4 > Sep 29 17:51:27 boss kernel: ide: Assuming 33MHz system bus speed for PIO > modes; override with idebus=xx > Sep 29 17:51:27 boss kernel: AMD7441: IDE controller at PCI slot 00:07.1 > Sep 29 17:51:27 boss kernel: AMD7441: chipset revision 4 > Sep 29 17:51:27 boss kernel: AMD7441: not 100%% native mode: will probe irqs > later > Sep 29 17:51:27 boss kernel: ide: Assuming 33MHz system bus speed for PIO > modes; override with idebus=xx > Sep 29 17:51:27 boss kernel: AMD_IDE: Advanced Micro Devices [AMD] AMD-768 > [Opus] IDE (rev 04) UDMA1 > 00 controller on pci00:07.1 > Sep 29 17:51:27 boss kernel: ide0: BM-DMA at 0xe000-0xe007, BIOS > settings: hda:DMA, hdb:pio > Sep 29 17:51:27 boss kernel: ide1: BM-DMA at 0xe008-0xe00f, BIOS > settings: hdc:pio, hdd:pio > Sep 29 17:51:27 boss kernel: hda: ST380011A, ATA DISK drive > Sep 29 17:51:27 boss kernel: blk: queue c0309fe0, I/O limit 4095Mb (mask > 0xffffffff) > Sep 29 17:51:27 boss kernel: ide0 at 0x1f0-0x1f7,0x3f6 on irq 14 > Sep 29 17:51:27 boss kernel: hda: attached ide-disk driver. > Sep 29 17:51:27 boss kernel: hda: 156301488 sectors (80026 MB) w/2048KiB > Cache, CHS=9729/255/63, UDMA(100) > Sep 29 17:51:27 boss kernel: Partition check: > Sep 29 17:51:27 boss kernel: hda: hda1 hda2 hda3 hda4 > Sep 29 17:51:27 boss kernel: NET4: Linux TCP/IP 1.0 for NET4.0 > Sep 29 17:51:27 boss kernel: IP: routing cache hash table of 4096 buckets, > 32Kbytes > Sep 29 17:51:27 boss kernel: TCP: Hash tables configured (established 32768 > bind 32768) > Sep 29 17:51:27 boss kernel: NET4: Unix domain sockets 1.0/SMP for Linux > NET4.0. > Sep 29 17:51:27 boss kernel: VFS: Mounted root (ext2 filesystem) readonly. > Sep 29 17:51:27 boss kernel: Freeing unused kernel memory: 264k freed > Sep 29 17:51:27 boss kernel: Adding Swap: 996020k swap-space (priority -1)
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